PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01512.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 252aa    MW: 28536.9 Da    PI: 8.3146
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01512.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-182272155
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             +++ GVr+++ +g+WvAeI+d +   ++ r +lg+f taeeAa+a+++a+  l+g
  Rsa1.0_01512.1_g00005.1 22 TKFVGVRQRP-SGKWVAEIKDTT---QKIRMWLGTFETAEEAARAYDEAACLLRG 72
                             699*******.7*********32...35**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.2E-132272IPR001471AP2/ERF domain
CDDcd000182.18E-332282No hitNo description
Gene3DG3DSA:3.30.730.101.9E-282381IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-192380IPR016177DNA-binding domain
PROSITE profilePS5103219.8232380IPR001471AP2/ERF domain
SMARTSM003807.0E-392386IPR001471AP2/ERF domain
PRINTSPR003674.1E-82435IPR001471AP2/ERF domain
PRINTSPR003674.1E-84662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MEQKTTQKQK TKEKSKGNNK KTKFVGVRQR PSGKWVAEIK DTTQKIRMWL GTFETAEEAA  60
RAYDEAACLL RGSNTRTNFA NHFPNNSQLS LKIRNLLHQK QSMKQQQQKQ QNKPVSSFSE  120
CNINYTSTAT SPTASNTTTV MQPHDVYRPD SSVMLQQEIE GVHLPYSCPF VSGFNHQVPM  180
TQGGEETHGH LNYSNSTDQH FGLADIEREI SASLYAMNGA TYYNNMNAEY AIFDPTDPIW  240
DLPSLSQLFC PI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-152479359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
3gcc_A4e-152079262ATERF1
2gcc_A4e-152079262ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAPTransfer from AT5G19790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013736368.11e-135PREDICTED: ethylene-responsive transcription factor RAP2-11-like
RefseqXP_013611989.11e-135PREDICTED: ethylene-responsive transcription factor RAP2-11-like
SwissprotQ6J9S11e-133RA211_ARATH; Ethylene-responsive transcription factor RAP2-11
TrEMBLA0A078HBS01e-135A0A078HBS0_BRANA; BnaC09g37870D protein
TrEMBLA0A0D3EDY71e-135A0A0D3EDY7_BRAOL; Uncharacterized protein
STRINGBra020063.1-P1e-132(Brassica rapa)
STRINGBra002262.1-P1e-132(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75262641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-106related to AP2 11